6/29/2023 0 Comments 6.7 torque pro extended pids csvgenes_list ( list) – List of gene IDs that you want to map.gem_file_type ( str) – GEM model type - sbml (or xml), mat, or json formats.gem_file_path ( str) – Path to GEM file.pdb_file_type ( str) – pdb, mmCif, xml, mmtf - file type for files downloaded from the PDB.Will not be created and output directories need to be specified for some steps. root_dir ( str) – Path to where the folder named after gem_name will be created.gem_name ( str) – The name of your GEM or just your project in general.Various cutoffs (mutations, insertions, deletions) can be set to filter structuresĪutomation of protein sequence and structure property calculationĬreation of Pandas DataFrame summaries directly from downloaded metadata.Structure-based calculations or functions.PDBProp - Working With a Single PDB Structure.Mapping sequence residue numbers to structure residue numbers.Protein - Structure Mapping, Alignments, and Visualization.Computing and storing protein properties.Mapping representative sequence –> structure. ![]() GEM-PRO - Calculating Protein Properties.
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